Figure 3-2: Alignment of the genome maps from Streptococcus pyogenes prophage SF370.2, Streptococcus thermophilus phage O1205 and Lactococcus lactis phage Tuc2009. Open reading frames were depicted when they exceeded 60 codons in length and when they started with an ATG codon (exceptions orf 33, 34 which start with GTG). The genes were identified by their codon length or were numbered starting with the integrase gene. The borders of the modules in SF370.2 and O1205 were tentatively noted and corresponding modules were marked with the same color. Selected proteins were annotated with their putative functions. The genes are connected with blue shading when the predicted proteins shared significant sequence similarity. Selected similarities are documented by % aa identity and their log BLAST E-values. Putative insertions are noted I1 to I4. Possible rho-independent terminators are indicated with a hairpin. The blue line provides the GC content curve for SF370.2 over the genome scale in bp. (for better image quality, click here for tif image, which may be quite large; may also require screen refreshing plus special software to view; or view larger tif in separate window)

Figure 3-1( left,  right ), Figure 3-2, Figure 3-3, Figure 3-4

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